CovidStanfordV1, Main, Exploration, bibRecord, 000710

Cautionary Note on Contamination of Reagents Used for Molecular Detection of SARS-CoV-2.

Identifieur interne : 000710 ( Main/Exploration ); précédent : 000709; suivant : 000711

Cautionary Note on Contamination of Reagents Used for Molecular Detection of SARS-CoV-2.

Auteurs : Jim F. Huggett [Royaume-Uni] ; Vladimir Benes [Allemagne] ; Stephen A. Bustin [Royaume-Uni] ; Jeremy A. Garson [Royaume-Uni] ; Karthyn Harris [Royaume-Uni] ; Martin Kammel [Allemagne] ; Mikael Kubista [République tchèque] ; Timothy D. Mchugh [Royaume-Uni] ; Jacob Moran-Gilad [Israël] ; Tania Nolan [Royaume-Uni] ; Michael W. Pfaffl [Allemagne] ; Marc Salit [États-Unis] ; Greg Shipley [États-Unis] ; Peter M. Vallone [États-Unis] ; Jo Vandesompele [Belgique] ; Carl Wittwer [États-Unis] ; Heinz Zeichhardt [Allemagne]

Source :

Clinical chemistry [ 1530-8561 ] ; 2020.

RBID : pubmed:32894756

Descripteurs français

KwdFr :
- ARN viral (génétique), ARN viral (métabolisme), Erreurs de diagnostic (MeSH), Humains (MeSH), Indicateurs et réactifs (composition chimique), Limite de détection (MeSH), Manipulation d'échantillons (normes), Partie nasale du pharynx (virologie), RT-PCR (MeSH).
MESH :
- composition chimique : Indicateurs et réactifs.
- génétique : ARN viral.
- métabolisme : ARN viral.
- normes : Manipulation d'échantillons.
- virologie : Partie nasale du pharynx.
- Erreurs de diagnostic, Humains, Limite de détection, RT-PCR.

English descriptors

KwdEn :
- COVID-19 (diagnosis), COVID-19 (virology), Diagnostic Errors (MeSH), Humans (MeSH), Indicators and Reagents (chemistry), Limit of Detection (MeSH), Nasopharynx (virology), RNA, Viral (genetics), RNA, Viral (metabolism), Reverse Transcriptase Polymerase Chain Reaction (MeSH), SARS-CoV-2 (genetics), SARS-CoV-2 (isolation & purification), Specimen Handling (standards).
MESH :
- chemical , chemistry : Indicators and Reagents.
- diagnosis : COVID-19.
- chemical , genetics : RNA, Viral, SARS-CoV-2.
- isolation & purification : SARS-CoV-2.
- chemical , metabolism : RNA, Viral.
- standards : Specimen Handling.
- virology : COVID-19, Nasopharynx.
- Diagnostic Errors, Humans, Limit of Detection, Reverse Transcriptase Polymerase Chain Reaction.

DOI: 10.1093/clinchem/hvaa214
PubMed: 32894756
PubMed Central: PMC7499524

Affiliations:

Links toward previous steps (curation, corpus...)

to stream Main, to step Corpus: 000343
to stream Main, to step Curation: 000343

Le document en format XML

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<sourceDesc><biblStruct><analytic><title xml:lang="en">Cautionary Note on Contamination of Reagents Used for Molecular Detection of SARS-CoV-2.</title>
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<author><name sortKey="Benes, Vladimir" sort="Benes, Vladimir" uniqKey="Benes V" first="Vladimir" last="Benes">Vladimir Benes</name>
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<author><name sortKey="Salit, Marc" sort="Salit, Marc" uniqKey="Salit M" first="Marc" last="Salit">Marc Salit</name>
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<placeName><region type="state">Californie</region>
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<author><name sortKey="Shipley, Greg" sort="Shipley, Greg" uniqKey="Shipley G" first="Greg" last="Shipley">Greg Shipley</name>
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<author><name sortKey="Vallone, Peter M" sort="Vallone, Peter M" uniqKey="Vallone P" first="Peter M" last="Vallone">Peter M. Vallone</name>
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<country>Belgique</country>
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<author><name sortKey="Zeichhardt, Heinz" sort="Zeichhardt, Heinz" uniqKey="Zeichhardt H" first="Heinz" last="Zeichhardt">Heinz Zeichhardt</name>
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<profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>COVID-19 (diagnosis)</term>
<term>COVID-19 (virology)</term>
<term>Diagnostic Errors (MeSH)</term>
<term>Humans (MeSH)</term>
<term>Indicators and Reagents (chemistry)</term>
<term>Limit of Detection (MeSH)</term>
<term>Nasopharynx (virology)</term>
<term>RNA, Viral (genetics)</term>
<term>RNA, Viral (metabolism)</term>
<term>Reverse Transcriptase Polymerase Chain Reaction (MeSH)</term>
<term>SARS-CoV-2 (genetics)</term>
<term>SARS-CoV-2 (isolation & purification)</term>
<term>Specimen Handling (standards)</term>
</keywords>
<keywords scheme="KwdFr" xml:lang="fr"><term>ARN viral (génétique)</term>
<term>ARN viral (métabolisme)</term>
<term>Erreurs de diagnostic (MeSH)</term>
<term>Humains (MeSH)</term>
<term>Indicateurs et réactifs (composition chimique)</term>
<term>Limite de détection (MeSH)</term>
<term>Manipulation d'échantillons (normes)</term>
<term>Partie nasale du pharynx (virologie)</term>
<term>RT-PCR (MeSH)</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="chemistry" xml:lang="en"><term>Indicators and Reagents</term>
</keywords>
<keywords scheme="MESH" qualifier="composition chimique" xml:lang="fr"><term>Indicateurs et réactifs</term>
</keywords>
<keywords scheme="MESH" qualifier="diagnosis" xml:lang="en"><term>COVID-19</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>RNA, Viral</term>
<term>SARS-CoV-2</term>
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</keywords>
<keywords scheme="MESH" qualifier="isolation & purification" xml:lang="en"><term>SARS-CoV-2</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="metabolism" xml:lang="en"><term>RNA, Viral</term>
</keywords>
<keywords scheme="MESH" qualifier="métabolisme" xml:lang="fr"><term>ARN viral</term>
</keywords>
<keywords scheme="MESH" qualifier="normes" xml:lang="fr"><term>Manipulation d'échantillons</term>
</keywords>
<keywords scheme="MESH" qualifier="standards" xml:lang="en"><term>Specimen Handling</term>
</keywords>
<keywords scheme="MESH" qualifier="virologie" xml:lang="fr"><term>Partie nasale du pharynx</term>
</keywords>
<keywords scheme="MESH" qualifier="virology" xml:lang="en"><term>COVID-19</term>
<term>Nasopharynx</term>
</keywords>
<keywords scheme="MESH" xml:lang="en"><term>Diagnostic Errors</term>
<term>Humans</term>
<term>Limit of Detection</term>
<term>Reverse Transcriptase Polymerase Chain Reaction</term>
</keywords>
<keywords scheme="MESH" xml:lang="fr"><term>Erreurs de diagnostic</term>
<term>Humains</term>
<term>Limite de détection</term>
<term>RT-PCR</term>
</keywords>
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<DateCompleted><Year>2020</Year>
<Month>12</Month>
<Day>16</Day>
</DateCompleted>
<DateRevised><Year>2020</Year>
<Month>12</Month>
<Day>16</Day>
</DateRevised>
<Article PubModel="Print"><Journal><ISSN IssnType="Electronic">1530-8561</ISSN>
<JournalIssue CitedMedium="Internet"><Volume>66</Volume>
<Issue>11</Issue>
<PubDate><Year>2020</Year>
<Month>11</Month>
<Day>01</Day>
</PubDate>
</JournalIssue>
<Title>Clinical chemistry</Title>
<ISOAbbreviation>Clin Chem</ISOAbbreviation>
</Journal>
<ArticleTitle>Cautionary Note on Contamination of Reagents Used for Molecular Detection of SARS-CoV-2.</ArticleTitle>
<Pagination><MedlinePgn>1369-1372</MedlinePgn>
</Pagination>
<ELocationID EIdType="doi" ValidYN="Y">10.1093/clinchem/hvaa214</ELocationID>
<AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Huggett</LastName>
<ForeName>Jim F</ForeName>
<Initials>JF</Initials>
<AffiliationInfo><Affiliation>National Measurement Laboratory (NML) at LGC, Queens Rd, Teddington, UK.</Affiliation>
</AffiliationInfo>
<AffiliationInfo><Affiliation>School of Biosciences & Medicine, Faculty of Health & Medical Science, University of Surrey, Guildford, UK.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Benes</LastName>
<ForeName>Vladimir</ForeName>
<Initials>V</Initials>
<AffiliationInfo><Affiliation>Genomics Core Facility, EMBL Heidelberg, Heidelberg, Germany.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Bustin</LastName>
<ForeName>Stephen A</ForeName>
<Initials>SA</Initials>
<AffiliationInfo><Affiliation>Medical Technology Research Centre, Faculty of Health, Social Care & Education, Anglia Ruskin University, Essex, UK.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Garson</LastName>
<ForeName>Jeremy A</ForeName>
<Initials>JA</Initials>
<AffiliationInfo><Affiliation>Division of Infection and Immunity, University College London, London, UK.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Harris</LastName>
<ForeName>Karthyn</ForeName>
<Initials>K</Initials>
<AffiliationInfo><Affiliation>Microbiology Department, Great Ormond Street Hospital NHS Foundation Trust, London, UK.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Kammel</LastName>
<ForeName>Martin</ForeName>
<Initials>M</Initials>
<AffiliationInfo><Affiliation>INSTAND e. V., Duesseldorf; IQVD GmbH, Institut fuer Qualitaetssicherung in der Virusdiagnostik, Berlin, Germany.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Kubista</LastName>
<ForeName>Mikael</ForeName>
<Initials>M</Initials>
<AffiliationInfo><Affiliation>TATAA Biocenter, Sweden and Institute of Biotechnology of the Czech Academy of Sciences, Czech Republic.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>McHugh</LastName>
<ForeName>Timothy D</ForeName>
<Initials>TD</Initials>
<AffiliationInfo><Affiliation>Division of Infection and Immunity, Center for Clinical Microbiology, University College London, UK.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Moran-Gilad</LastName>
<ForeName>Jacob</ForeName>
<Initials>J</Initials>
<AffiliationInfo><Affiliation>Department of Health Systems Management, School of Public Health, Faculty of Health Sciences, Ben Gurion University of the Negev, Beer Sheva, Israel.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Nolan</LastName>
<ForeName>Tania</ForeName>
<Initials>T</Initials>
<AffiliationInfo><Affiliation>Institute of Population Health, Faculty of Medical and Human Sciences, University of Manchester, The Gene Team, Manchester, UK.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Pfaffl</LastName>
<ForeName>Michael W</ForeName>
<Initials>MW</Initials>
<AffiliationInfo><Affiliation>Animal Physiology and Immunology, School of Life Sciences Weihenstephan, Technical University of Munich, Freising, Germany.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Salit</LastName>
<ForeName>Marc</ForeName>
<Initials>M</Initials>
<AffiliationInfo><Affiliation>Joint Initiative for Metrology in Biology, SLAC National Accelerator Laboratory, Menlo Park, CA.</Affiliation>
</AffiliationInfo>
<AffiliationInfo><Affiliation>Department of Bioengineering and Pathology, Stanford University, Stanford, CA.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Shipley</LastName>
<ForeName>Greg</ForeName>
<Initials>G</Initials>
<AffiliationInfo><Affiliation>Shipley Consulting, LLC, Vancouver, WA.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Vallone</LastName>
<ForeName>Peter M</ForeName>
<Initials>PM</Initials>
<AffiliationInfo><Affiliation>National Institute of Standards and Technology, Gaithersburg, MD.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Vandesompele</LastName>
<ForeName>Jo</ForeName>
<Initials>J</Initials>
<AffiliationInfo><Affiliation>Department of Biomolecular Medicine, Ghent University.</Affiliation>
</AffiliationInfo>
<AffiliationInfo><Affiliation>Biogazelle, Belgium; Ghent University, Belgium.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Wittwer</LastName>
<ForeName>Carl</ForeName>
<Initials>C</Initials>
<AffiliationInfo><Affiliation>Department of Pathology, University of Utah, Salt Lake City, UT.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Zeichhardt</LastName>
<ForeName>Heinz</ForeName>
<Initials>H</Initials>
<AffiliationInfo><Affiliation>INSTAND e. V., Duesseldorf; Charité - University Medicine Berlin; IQVD GmbH, Institut fuer Qualitaetssicherung in der Virusdiagnostik, Berlin, Germany.</Affiliation>
</AffiliationInfo>
</Author>
</AuthorList>
<Language>eng</Language>
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</PublicationTypeList>
</Article>
<MedlineJournalInfo><Country>England</Country>
<MedlineTA>Clin Chem</MedlineTA>
<NlmUniqueID>9421549</NlmUniqueID>
<ISSNLinking>0009-9147</ISSNLinking>
</MedlineJournalInfo>
<ChemicalList><Chemical><RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D007202">Indicators and Reagents</NameOfSubstance>
</Chemical>
<Chemical><RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D012367">RNA, Viral</NameOfSubstance>
</Chemical>
</ChemicalList>
<CitationSubset>IM</CitationSubset>
<MeshHeadingList><MeshHeading><DescriptorName UI="D000086382" MajorTopicYN="N">COVID-19</DescriptorName>
<QualifierName UI="Q000175" MajorTopicYN="Y">diagnosis</QualifierName>
<QualifierName UI="Q000821" MajorTopicYN="N">virology</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D003951" MajorTopicYN="N">Diagnostic Errors</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D006801" MajorTopicYN="N">Humans</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D007202" MajorTopicYN="N">Indicators and Reagents</DescriptorName>
<QualifierName UI="Q000737" MajorTopicYN="Y">chemistry</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D057230" MajorTopicYN="N">Limit of Detection</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D009305" MajorTopicYN="N">Nasopharynx</DescriptorName>
<QualifierName UI="Q000821" MajorTopicYN="N">virology</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D012367" MajorTopicYN="N">RNA, Viral</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
<QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D020133" MajorTopicYN="N">Reverse Transcriptase Polymerase Chain Reaction</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D000086402" MajorTopicYN="N">SARS-CoV-2</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName>
<QualifierName UI="Q000302" MajorTopicYN="N">isolation & purification</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D013048" MajorTopicYN="N">Specimen Handling</DescriptorName>
<QualifierName UI="Q000592" MajorTopicYN="N">standards</QualifierName>
</MeshHeading>
</MeshHeadingList>
<KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="Y">RT-qPCR</Keyword>
<Keyword MajorTopicYN="Y">SARS-CoV-2</Keyword>
<Keyword MajorTopicYN="Y">contamination</Keyword>
<Keyword MajorTopicYN="Y">false positive</Keyword>
<Keyword MajorTopicYN="Y">molecular diagnosis</Keyword>
</KeywordList>
</MedlineCitation>
<PubmedData><History><PubMedPubDate PubStatus="received"><Year>2020</Year>
<Month>08</Month>
<Day>03</Day>
</PubMedPubDate>
<PubMedPubDate PubStatus="accepted"><Year>2020</Year>
<Month>08</Month>
<Day>24</Day>
</PubMedPubDate>
<PubMedPubDate PubStatus="pubmed"><Year>2020</Year>
<Month>9</Month>
<Day>8</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
<PubMedPubDate PubStatus="medline"><Year>2020</Year>
<Month>12</Month>
<Day>17</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
<PubMedPubDate PubStatus="entrez"><Year>2020</Year>
<Month>9</Month>
<Day>7</Day>
<Hour>17</Hour>
<Minute>5</Minute>
</PubMedPubDate>
</History>
<PublicationStatus>ppublish</PublicationStatus>
<ArticleIdList><ArticleId IdType="pubmed">32894756</ArticleId>
<ArticleId IdType="pii">5902447</ArticleId>
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</pubmed>
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<li>Royaume-Uni</li>
<li>République tchèque</li>
<li>États-Unis</li>
</country>
<region><li>Angleterre</li>
<li>Bade-Wurtemberg</li>
<li>Bavière</li>
<li>Berlin</li>
<li>Californie</li>
<li>District de Haute-Bavière</li>
<li>District de Karlsruhe</li>
<li>Grand Londres</li>
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<settlement><li>Berlin</li>
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<orgName><li>University College de Londres</li>
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</list>
<tree><country name="Royaume-Uni"><noRegion><name sortKey="Huggett, Jim F" sort="Huggett, Jim F" uniqKey="Huggett J" first="Jim F" last="Huggett">Jim F. Huggett</name>
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<name sortKey="Harris, Karthyn" sort="Harris, Karthyn" uniqKey="Harris K" first="Karthyn" last="Harris">Karthyn Harris</name>
<name sortKey="Huggett, Jim F" sort="Huggett, Jim F" uniqKey="Huggett J" first="Jim F" last="Huggett">Jim F. Huggett</name>
<name sortKey="Mchugh, Timothy D" sort="Mchugh, Timothy D" uniqKey="Mchugh T" first="Timothy D" last="Mchugh">Timothy D. Mchugh</name>
<name sortKey="Nolan, Tania" sort="Nolan, Tania" uniqKey="Nolan T" first="Tania" last="Nolan">Tania Nolan</name>
</country>
<country name="Allemagne"><region name="Bade-Wurtemberg"><name sortKey="Benes, Vladimir" sort="Benes, Vladimir" uniqKey="Benes V" first="Vladimir" last="Benes">Vladimir Benes</name>
</region>
<name sortKey="Kammel, Martin" sort="Kammel, Martin" uniqKey="Kammel M" first="Martin" last="Kammel">Martin Kammel</name>
<name sortKey="Pfaffl, Michael W" sort="Pfaffl, Michael W" uniqKey="Pfaffl M" first="Michael W" last="Pfaffl">Michael W. Pfaffl</name>
<name sortKey="Zeichhardt, Heinz" sort="Zeichhardt, Heinz" uniqKey="Zeichhardt H" first="Heinz" last="Zeichhardt">Heinz Zeichhardt</name>
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<country name="République tchèque"><noRegion><name sortKey="Kubista, Mikael" sort="Kubista, Mikael" uniqKey="Kubista M" first="Mikael" last="Kubista">Mikael Kubista</name>
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</country>
<country name="Israël"><noRegion><name sortKey="Moran Gilad, Jacob" sort="Moran Gilad, Jacob" uniqKey="Moran Gilad J" first="Jacob" last="Moran-Gilad">Jacob Moran-Gilad</name>
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<country name="États-Unis"><region name="Californie"><name sortKey="Salit, Marc" sort="Salit, Marc" uniqKey="Salit M" first="Marc" last="Salit">Marc Salit</name>
</region>
<name sortKey="Salit, Marc" sort="Salit, Marc" uniqKey="Salit M" first="Marc" last="Salit">Marc Salit</name>
<name sortKey="Shipley, Greg" sort="Shipley, Greg" uniqKey="Shipley G" first="Greg" last="Shipley">Greg Shipley</name>
<name sortKey="Vallone, Peter M" sort="Vallone, Peter M" uniqKey="Vallone P" first="Peter M" last="Vallone">Peter M. Vallone</name>
<name sortKey="Wittwer, Carl" sort="Wittwer, Carl" uniqKey="Wittwer C" first="Carl" last="Wittwer">Carl Wittwer</name>
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<country name="Belgique"><region name="Région flamande"><name sortKey="Vandesompele, Jo" sort="Vandesompele, Jo" uniqKey="Vandesompele J" first="Jo" last="Vandesompele">Jo Vandesompele</name>
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<name sortKey="Vandesompele, Jo" sort="Vandesompele, Jo" uniqKey="Vandesompele J" first="Jo" last="Vandesompele">Jo Vandesompele</name>
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Cautionary Note on Contamination of Reagents Used for Molecular Detection of SARS-CoV-2.

Cautionary Note on Contamination of Reagents Used for Molecular Detection of SARS-CoV-2.

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